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VO Id Card : chipster.csc.fi   Update

  • 1 General Information
  • 2 Aknowledgement statement
  • 3 Resources

General information

Name chipster.csc.fi
Status Production
Validation date 2015-03-17
Last change 2016-07-11
Discipline
  • Natural Sciences
    • Biological sciences
Enrollment Url https://voms.fgi.csc.fi:8443/
Homepage Url http://chipster.csc.fi
Support Procedure Url http://chipster.csc.fi

Description

Chipster VO brings an easy-to-use analysis platform for Next Generation Sequencing (NGS) and microarray data available for European research community. By joining Chipster VO, European researchers can easily launch Chipster virtual servers that include over 360 pre-installed analysis tools for NGS and microarray data. The Chipster server also includes a large set of ready-to-use reference data such as genome indexes for various aligners. The analysis tools can be used as normal command-line applications, or through the intuitive Chipster GUI which also provides interactive visualizations and workflow functionality. This locally running graphical client program allows end-users to use Chipster without having to log in directly to the virtual server.

Acceptable Use Policy

text This Acceptable Use Policy applies to all members of Chipster Virtual Organisation (chipster.csc.fi),
hereafter referred to as the VO, with reference to use of the European Grid Infrastructure (EGI),
hereafter referred to as the Grid.

The CSC – IT Center for Science Ltd. owns and gives authority to this policy.

Goal and description of the Chipster. VO
--------------------------------------------------------------------
Chipster VO brings an easy-to-use analysis platform for Next Generation Sequencing (NGS) and microarray data available for European research community. By joining Chipster VO, European researchers can easily launch Chipster virtual servers that include over 340 pre-installed analysis tools for NGS and microarray data, and it also includes a large set of ready-to-use reference data such as genome indexes for various aligners. The analysis tools can be used as normal command-line applications, or through the intuitive Chipster GUI which also provides interactive visualizations and workflow functionality. This locally running graphical client program allows end-users to use Chipster without having to log in directly to the virtual server.


The members of the VO may use the VO resources only for non-commercial academic work that utlises the tools implemented to Chipster. Members and Managers of the VO agree to be bound by the Grid Acceptable Usage Rules, VO Security Policy and other relevant Grid Policies, and to use the Grid only in the furtherance of the stated goal of the VO.

CHIPSTER VO SPESIFC RULES

As the Chipster VO has very limited resources, we ask the VO members to use the resources according to
following guidelines.

- Do not use more than 4 cores, 16 GB of memory and 100 GB of storage space. In practice this means that
you can have just one Chipster server running at a time.

- Shut down your VM when Chipster is not actively used.

- If you keep your server running for more than one month, please be prepared to provide usage statistics of your server to
the VO manager.

Acknowledgments Statement

Grant Id n/a
Scientific publications URL
Suggested This work benefited from services provided by the Chipster Virtual Organisation, supported by the national resource providers of the EGI Federation.

Resources

Max used physical non-swap i386 memory size 0
Max used physical non-swap x86_64 memory size 0
Max size of scratch space used by jobs 0
Max time of job execution 0
Job wall clock time limit 0
number cores
min number cores :
pref number cores :
max number cores :
number of ram
min number ram :
pref number ram :
max number ram :
scratch space values
min scratch space values :
pref scratch space values :
max scratch space values :

Cloud Resources

CPU Core 4
VM Ram 16
Storage Size 500

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