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VO Id Card : highthroughputseq.egi.eu   Update

  • 1 General Information
  • 2 Aknowledgement statement
  • 3 Resources

General information

Name highthroughputseq.egi.eu
Status Production
Validation date 2014-06-24
Last change 2016-01-06
Discipline
  • Natural Sciences
    • Biological sciences
      • Bioinformatics global
Enrollment Url https://perun.metacentrum.cz/perun-registrar-cert/?vo=highthroughputseq.egi.eu
Homepage Url http://pythonhosted.org/READemption/
Support Procedure Url

Description

RNA-sequencing analysis of data has performed to understand different biological features and behaviour. The research team generated a workflow based on a pipeline built to satisfy many experiments using Python 3.4, third party-libraries (numpy, pysam, matplotlib) and some external tools as segemehl and R. The running time heavily depends on the size and type of data. Usually takes some hour to some day. The workflow will be published as open source tool soon. Indeed, it’s a very common approach.

Acceptable Use Policy

text This Acceptable Use Policy applies to all members of [VoName] Virtual Organisation,
hereafter referred to as the VO, with reference to use of the European Grid Infrastructure (EGI),
hereafter referred to as the Grid.

The highthroughputseq community VO manager owns and gives authority to this policy.

Goal and description of the highthroughputseq.egi.eu VO
---------------------------------------------------------------------
The highthroughputseq.egi.eu VO aims to support community working with sequencing data and running simulations requiring big amount of resource capabilities in term of memory and number of cpu cores.

Members and Managers of the VO agree to be bound by the Grid Acceptable Usage Rules, VO Security Policy and other relevant Grid Policies, and to use the Grid only in the furtherance of the stated goal of the VO.

Acknowledgments Statement

No Acknowledgment Statement

Resources

Max used physical non-swap i386 memory size 0
Max used physical non-swap x86_64 memory size 0
Max size of scratch space used by jobs 0
Max time of job execution 0
Job wall clock time limit 0
number cores
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number of ram
min number ram :
pref number ram :
max number ram :
scratch space values
min scratch space values :
pref scratch space values :
max scratch space values :

Cloud Resources

CPU Core
VM Ram
Storage Size

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